Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | IZT61_04610 | T2KPM5 | - | 1157543 - 1159132 | 59341.3 |
| susc/raga family tonb-linked outer membrane protein | IZT61_04615 | T2KM18 | - | 1159142 - 1162552 | 123687.0 |
| fadr family transcriptional regulator | IZT61_04620 | P44487 | + | 1162718 - 1163422 | 26573.3 |
| glycoside hydrolase family 16 protein | IZT61_04625 | Q9ZG90 | - | 1163529 - 1164353 | 30922.5 |
| lamg domain-containing protein | IZT61_04630 | Not Available | - | 1164423 - 1165133 | 26241.2 |
| dna/rna non-specific endonuclease | IZT61_04635 | P38446 | + | 1165346 - 1166779 | 50788.1 |
| cold shock domain-containing protein | IZT61_04640 | Q5HPE0 | + | 1167530 - 1167787 | 9694.69 |
| rna polymerase sigma factor | IZT61_04645 | A0QTP2 | - | 1167834 - 1168349 | 19795.0 |
| hypothetical protein | IZT61_04650 | Not Available | - | 1169244 - 1169702 | 17406.7 |
| hypothetical protein | IZT61_04655 | Not Available | + | 1170379 - 1170855 | 17984.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.