Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | IZT61_04560 | Not Available | + | 1144684 - 1145037 | 13526.8 |
| dmt family transporter | IZT61_04565 | P76585 | - | 1145771 - 1146577 | 29142.8 |
| family 20 glycosylhydrolase | IZT61_04570 | P49008 | - | 1146658 - 1148925 | 85961.0 |
| hypothetical protein | IZT61_04575 | Not Available | - | 1148882 - 1149238 | 13260.0 |
| age family epimerase/isomerase | IZT61_04580 | Q2KIS1 | - | 1149254 - 1150435 | 45932.5 |
| sialate o-acetylesterase | IZT61_04585 | D5EV35 | - | 1150442 - 1152514 | 76954.4 |
| exo-alpha-sialidase | IZT61_04590 | P31206 | - | 1152518 - 1154071 | 56805.8 |
| mfs transporter | IZT61_04595 | P37489 | - | 1154082 - 1155311 | 44785.7 |
| hypothetical protein | IZT61_04600 | Q2YK69 | - | 1155308 - 1156465 | 41933.8 |
| dihydrodipicolinate synthase family protein | IZT61_04605 | Q5RDY1 | - | 1156521 - 1157441 | 33391.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.