Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| toprim domain-containing protein | IZT61_04510 | Not Available | - | 1133209 - 1134180 | 36043.8 |
| hypothetical protein | IZT61_04515 | Not Available | + | 1134708 - 1135856 | 43652.5 |
| hypothetical protein | IZT61_04520 | Not Available | - | 1135860 - 1136096 | 8990.91 |
| crp/fnr family transcriptional regulator | IZT61_04525 | Not Available | + | 1136423 - 1137007 | 23067.3 |
| hypothetical protein | IZT61_04530 | Not Available | + | 1137106 - 1137540 | 15866.2 |
| hypothetical protein | IZT61_04535 | Not Available | + | 1137713 - 1138102 | 13659.7 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_04540 | Not Available | - | 1138164 - 1139528 | 51002.7 |
| susc/raga family tonb-linked outer membrane protein | IZT61_04545 | Q8A1G1 | - | 1139542 - 1142772 | 117071.0 |
| redoxin family protein | IZT61_04550 | O31820 | - | 1142795 - 1143424 | 23059.1 |
| hypothetical protein | IZT61_04555 | Not Available | - | 1143560 - 1143910 | 13306.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.