Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_04060 | Not Available | + | 1021939 - 1022175 | 8866.25 |
| type ii toxin-antitoxin system rele/pare family toxin | IZT61_04065 | Not Available | + | 1022165 - 1022455 | 11318.8 |
| duf4973 domain-containing protein | IZT61_04070 | Not Available | - | 1022793 - 1023794 | 38800.9 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_04075 | A7LXT5 | - | 1023814 - 1025892 | 78490.2 |
| tonb-dependent receptor | IZT61_04080 | T2KM18 | - | 1025905 - 1029042 | 116832.0 |
| ipt/tig domain-containing protein | IZT61_04085 | A4IF69 | - | 1029064 - 1030449 | 52187.3 |
| duf3037 domain-containing protein | IZT61_04090 | Not Available | - | 1031715 - 1032620 | 35668.5 |
| hypothetical protein | IZT61_04095 | Not Available | - | 1032590 - 1033414 | 31367.8 |
| hypothetical protein | IZT61_04100 | Not Available | - | 1033520 - 1033996 | 18562.1 |
| error-prone repair protein imua | IZT61_04105 | Q9A3J1 | + | 1034169 - 1034906 | 27078.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.