Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cation transporter | IZT61_03710 | Q5IRJ6 | + | 932299 - 933240 | 34757.9 |
| nadp-dependent oxidoreductase | IZT61_03715 | Q924D0 | - | 933370 - 934299 | 33387.5 |
| hypothetical protein | IZT61_03720 | Not Available | - | 934580 - 934777 | 7745.58 |
| dabb family protein | IZT61_03725 | Not Available | - | 935227 - 935523 | 11405.6 |
| dna ligase d | IZT61_03730 | Q9I1X7 | - | 935712 - 938411 | 102672.0 |
| duf3606 domain-containing protein | IZT61_03735 | Not Available | - | 938418 - 938591 | 6295.41 |
| duf3606 domain-containing protein | IZT61_03740 | Not Available | + | 939088 - 939309 | 8526.21 |
| hypothetical protein | IZT61_03745 | Not Available | + | 939312 - 939497 | 6734.32 |
| glycogen debranching protein glgx | IZT61_03750 | P0A4Y5 | - | 939503 - 941632 | 80980.4 |
| gh92 family glycosyl hydrolase | IZT61_03755 | O86365 | - | 942222 - 944375 | 80476.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.