Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| endo-1,4-beta-xylanase | IZT61_03460 | P36917 | - | 861822 - 862913 | 39943.2 |
| beta-glucuronidase | IZT61_03465 | T2KPJ7 | - | 863448 - 865277 | 70190.1 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_03470 | T2KNB8 | - | 866147 - 867868 | 63874.8 |
| tonb-dependent receptor | IZT61_03475 | T2KM18 | - | 867880 - 870954 | 112035.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_03480 | T2KN63 | - | 870991 - 872703 | 63962.8 |
| tonb-dependent receptor | IZT61_03485 | T2KPJ3 | - | 872708 - 875887 | 116495.0 |
| hypothetical protein | IZT61_03490 | Not Available | - | 876037 - 876177 | 5501.55 |
| laci family dna-binding transcriptional regulator | IZT61_03495 | P25144 | + | 876341 - 877357 | 38582.4 |
| mbl fold metallo-hydrolase | IZT61_03500 | C0SP91 | + | 877965 - 878801 | 31107.2 |
| glutathione peroxidase | IZT61_03505 | O32770 | - | 879039 - 879554 | 19419.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.