Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | IZT61_03110 | O66534 | + | 778710 - 779765 | 39411.5 |
| dmt family transporter | IZT61_03115 | P44170 | + | 779762 - 780625 | 31795.6 |
| yigz family protein | IZT61_03120 | P44842 | + | 780615 - 781229 | 23267.1 |
| nucleoside phosphorylase | IZT61_03125 | Q5JJC1 | + | 781253 - 782113 | 31271.8 |
| hypothetical protein | IZT61_03130 | Not Available | - | 782240 - 782551 | 11713.9 |
| rieske 2fe-2s domain-containing protein | IZT61_03135 | Q51493 | - | 782619 - 782954 | 12518.8 |
| 7-carboxy-7-deazaguanine synthase quee | IZT61_03140 | A6H1N2 | + | 783061 - 783684 | 23394.2 |
| pd40 domain-containing protein | IZT61_03145 | A0A160PAH3 | + | 783720 - 785606 | 70425.5 |
| dna helicase recq | IZT61_03150 | P71359 | - | 786328 - 788517 | 82086.4 |
| mannose-1-phosphate guanylyltransferase | IZT61_03155 | Q07024 | + | 789017 - 790108 | 40961.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.