Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | IZT61_02860 | T2KPJ3 | - | 711057 - 714299 | 117291.0 |
| hypothetical protein | IZT61_02865 | Not Available | + | 715119 - 715625 | 18651.4 |
| hypothetical protein | IZT61_02870 | Not Available | - | 716228 - 717172 | 34344.8 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_02875 | T2KPM5 | - | 717202 - 719037 | 68486.1 |
| tonb-dependent receptor | IZT61_02880 | T2KPJ3 | - | 719064 - 722195 | 116052.0 |
| duf3826 domain-containing protein | IZT61_02885 | Not Available | - | 722539 - 723207 | 25337.5 |
| fucose isomerase | IZT61_02890 | Not Available | - | 723220 - 724857 | 61279.3 |
| arac family transcriptional regulator | IZT61_02895 | P96660 | + | 725097 - 725966 | 33716.9 |
| dihydrodipicolinate synthase family protein | IZT61_02900 | Q15SZ4 | - | 726329 - 727261 | 34666.5 |
| sodium:solute symporter | IZT61_02905 | Q5E733 | - | 727315 - 728883 | 57634.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.