Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_02410 | Not Available | - | 574316 - 574960 | 24449.6 |
| arac family transcriptional regulator | IZT61_02415 | Q46855 | - | 575086 - 575952 | 33646.5 |
| lyttr family transcriptional regulator | IZT61_02420 | Not Available | - | 576018 - 576932 | 35292.0 |
| lyttr family transcriptional regulator | IZT61_02425 | Not Available | - | 577443 - 578303 | 32878.6 |
| hypothetical protein | IZT61_02430 | Not Available | + | 578468 - 580171 | 63420.0 |
| hypothetical protein | IZT61_02435 | Not Available | + | 580174 - 587319 | 262382.0 |
| hypothetical protein | IZT61_02440 | P50899 | + | 587323 - 589443 | 78301.1 |
| ubid family decarboxylase | IZT61_02445 | O84087 | - | 589583 - 591418 | 67621.5 |
| dna starvation/stationary phase protection protein | IZT61_02450 | P45173 | - | 591626 - 592105 | 18432.0 |
| lysm peptidoglycan-binding domain-containing protein | IZT61_02455 | P37710 | + | 592383 - 593888 | 54631.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.