Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uma2 family endonuclease | IZT61_21965 | P72821 | + | 5380431 - 5381069 | 24339.3 |
| uma2 family endonuclease | IZT61_21970 | P72873 | + | 5381069 - 5381713 | 24640.4 |
| valine--trna ligase | IZT61_21975 | A6LIG7 | + | 5382381 - 5385071 | 103151.0 |
| gfo/idh/moca family oxidoreductase | IZT61_21980 | B5F3F4 | + | 5385584 - 5386939 | 50819.3 |
| duf1080 domain-containing protein | IZT61_21985 | Not Available | + | 5386976 - 5388340 | 50104.9 |
| gfo/idh/moca family oxidoreductase | IZT61_21990 | T2KNC8 | + | 5388340 - 5389533 | 44329.3 |
| type i restriction enzyme hsdr n-terminal domain-containing protein | IZT61_21995 | Not Available | - | 5389836 - 5390294 | 17720.8 |
| sumf1/egtb/pvdo family nonheme iron enzyme | IZT61_22000 | V9TSX0 | - | 5390357 - 5391037 | 25977.6 |
| dna polymerase iii subunit delta | IZT61_22005 | P54459 | + | 5391133 - 5392155 | 38751.0 |
| hypothetical protein | IZT61_22010 | P23648 | - | 5392245 - 5393717 | 54022.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.