Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_21915 | Not Available | - | 5368251 - 5368700 | 16881.3 |
| ai-2e family transporter | IZT61_21920 | O34472 | - | 5368719 - 5369828 | 41456.9 |
| aldo/keto reductase | IZT61_21925 | P77735 | - | 5369910 - 5370857 | 35556.6 |
| trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd | IZT61_21930 | A0LA84 | - | 5371148 - 5371840 | 25427.3 |
| mmcq/yjbr family dna-binding protein | IZT61_21935 | Not Available | + | 5372898 - 5373236 | 12735.4 |
| duf2625 domain-containing protein | IZT61_21940 | P44670 | - | 5373518 - 5374294 | 29161.1 |
| m13 family metallopeptidase | IZT61_21945 | Q9W5Y0 | - | 5374511 - 5376547 | 75694.1 |
| cadmium-translocating p-type atpase | IZT61_21950 | Q59998 | + | 5377084 - 5379060 | 71376.1 |
| uma2 family endonuclease | IZT61_21955 | P72821 | + | 5379151 - 5379789 | 24377.0 |
| uma2 family endonuclease | IZT61_21960 | P72821 | + | 5379791 - 5380429 | 24222.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.