Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate decarboxylase | IZT61_01560 | Q8A800 | + | 359775 - 360947 | 43733.8 |
| transposase | IZT61_01565 | Q57066 | + | 361048 - 361563 | 19887.3 |
| is3 family transposase | IZT61_01570 | P19769 | + | 361500 - 362405 | 35750.6 |
| duf763 domain-containing protein | IZT61_01575 | Not Available | - | 362533 - 363732 | 44205.1 |
| metallophosphoesterase family protein | IZT61_01580 | Not Available | + | 363836 - 364927 | 41931.8 |
| gaf domain-containing sensor histidine kinase | IZT61_01585 | Q4A159 | - | 364920 - 366053 | 41773.2 |
| glycoside hydrolase family 130 protein | IZT61_01590 | B0K2C2 | + | 366226 - 367698 | 56256.6 |
| glycosyltransferase family 4 protein | IZT61_01595 | P46915 | - | 367840 - 370110 | 85504.3 |
| ku protein | IZT61_01600 | A5FEP6 | + | 370241 - 371011 | 29422.7 |
| alpha/beta hydrolase | IZT61_01605 | P9WK86 | - | 371571 - 372701 | 39959.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.