Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_01410 | Not Available | + | 326965 - 328533 | 58197.8 |
| hypothetical protein | IZT61_01415 | Not Available | + | 328551 - 330059 | 53139.0 |
| calcineurin-like phosphoesterase c-terminal domain-containing protein | IZT61_01420 | Not Available | + | 330430 - 331839 | 53064.8 |
| glycerophosphodiester phosphodiesterase | IZT61_01425 | P37965 | + | 332478 - 333332 | 32129.8 |
| glycerol-3-phosphate transporter | IZT61_01430 | P37948 | + | 333406 - 334752 | 50033.3 |
| sialate o-acetylesterase | IZT61_01435 | Q07792 | + | 334944 - 335636 | 26205.9 |
| dethiobiotin synthase | IZT61_01440 | Q11QU6 | - | 336287 - 336895 | 22079.0 |
| pyridoxal phosphate-dependent aminotransferase family protein | IZT61_01445 | C8V1D1 | - | 336897 - 338018 | 41159.0 |
| hypothetical protein | IZT61_01450 | Not Available | - | 338795 - 339247 | 16918.7 |
| helix-turn-helix domain-containing protein | IZT61_01455 | P45902 | - | 339324 - 340100 | 29446.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.