Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose/gdp-mannose dehydrogenase family protein | IZT61_01260 | O86422 | - | 288668 - 290041 | 50152.1 |
| gdp-l-fucose synthase | IZT61_01265 | Q9LMU0 | - | 290096 - 291034 | 35117.0 |
| gdp-mannose 4,6-dehydratase | IZT61_01270 | Q06952 | - | 291071 - 292183 | 41850.1 |
| response regulator transcription factor | IZT61_01275 | P23620 | - | 292894 - 293250 | 13477.2 |
| Trna-arg | Not Available | Not Available | + | 293457 - 293533 | Not Available |
| tonb-dependent receptor | IZT61_01285 | P17315 | + | 293879 - 296335 | 90260.1 |
| hypothetical protein | IZT61_01290 | Not Available | + | 296693 - 296908 | 7829.86 |
| hypothetical protein | IZT61_01295 | Not Available | - | 297072 - 297320 | 9424.32 |
| duf3291 domain-containing protein | IZT61_01300 | P17055 | - | 297343 - 298026 | 25925.3 |
| gaf domain-containing protein | IZT61_01305 | Q8MTJ7 | + | 298145 - 298633 | 17926.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.