Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_00960 | Not Available | + | 213131 - 213745 | 23484.2 |
| thioredoxin | IZT61_00965 | P52232 | + | 213854 - 214150 | 10838.3 |
| ligase-associated dna damage response endonuclease pdem | IZT61_00970 | Q60344 | - | 214151 - 214789 | 24057.1 |
| ligase-associated dna damage response dexh box helicase | IZT61_00975 | Q57742 | - | 214840 - 217317 | 93335.9 |
| atp-dependent dna ligase | IZT61_00980 | Q1II25 | - | 217445 - 219034 | 60951.9 |
| ligase-associated dna damage response exonuclease | IZT61_00985 | B1ZZL9 | - | 219031 - 220086 | 39660.8 |
| transcriptional regulator | IZT61_00990 | Not Available | + | 220270 - 220878 | 22360.1 |
| duf3307 domain-containing protein | IZT61_00995 | Not Available | + | 220878 - 221591 | 27140.4 |
| s9 family peptidase | IZT61_01000 | Q6F3I7 | - | 221990 - 224161 | 81117.9 |
| duf4412 domain-containing protein | IZT61_01005 | Not Available | - | 224256 - 224939 | 24350.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.