Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa thioesterase | IZT61_00610 | Q45061 | - | 132023 - 132436 | 15901.2 |
| endolytic transglycosylase mltg | IZT61_00615 | O34758 | - | 132436 - 133491 | 40097.5 |
| pasta domain-containing protein | IZT61_00620 | Q8R9T6 | - | 133507 - 134271 | 27451.0 |
| d-alanine--d-alanine ligase | IZT61_00625 | A6KXU3 | + | 134473 - 135459 | 36482.8 |
| crp/fnr family transcriptional regulator | IZT61_00630 | P0A4U6 | + | 135473 - 136069 | 22608.7 |
| hypothetical protein | IZT61_00635 | Not Available | - | 136411 - 137130 | 25725.6 |
| duf4372 domain-containing protein | IZT61_00640 | Not Available | + | 137348 - 137881 | 20355.5 |
| transposase | IZT61_00645 | P55729 | + | 137827 - 138522 | 26976.9 |
| duf983 domain-containing protein | IZT61_00650 | Not Available | + | 139210 - 139611 | 15222.7 |
| discoidin domain-containing protein | IZT61_00655 | T2KPJ7 | + | 139886 - 142426 | 94238.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.