Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_06305 | Not Available | - | 1562406 - 1564175 | 66283.5 |
| hlyd family efflux transporter periplasmic adaptor subunit | IZT61_06310 | P75830 | + | 1564595 - 1565842 | 46089.9 |
| tolc family protein | IZT61_06315 | Not Available | + | 1565847 - 1567304 | 55259.1 |
| abc transporter atp-binding protein | IZT61_06320 | O31711 | + | 1567621 - 1568286 | 24601.8 |
| abc transporter permease | IZT61_06325 | Q57R58 | + | 1568297 - 1569529 | 46347.7 |
| abc transporter permease | IZT61_06330 | Q6MPX9 | + | 1569541 - 1570722 | 44627.2 |
| sigma-54-dependent fis family transcriptional regulator | IZT61_06335 | Q06065 | + | 1570743 - 1572116 | 50885.7 |
| hamp domain-containing protein | IZT61_06340 | Q04850 | + | 1572100 - 1573359 | 47793.8 |
| prc-barrel domain-containing protein | IZT61_06345 | Q9RUR8 | + | 1573694 - 1574185 | 18718.1 |
| family 78 glycoside hydrolase catalytic domain | IZT61_06350 | P9WF03 | - | 1574506 - 1577184 | 100227.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.