Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cation transporter | IZT61_05905 | P74068 | - | 1455531 - 1456517 | 36697.1 |
| pyridoxal phosphate-dependent aminotransferase | IZT61_05910 | Q8KDS8 | + | 1456630 - 1457826 | 43928.2 |
| gdp-mannose 4,6-dehydratase | IZT61_05915 | F8C4X8 | + | 1458054 - 1459031 | 36914.5 |
| glycosyltransferase family 39 protein | IZT61_05920 | Q3KCB9 | + | 1459024 - 1460661 | 62268.5 |
| glycosyltransferase family 2 protein | IZT61_05925 | Q1MJ95 | + | 1460665 - 1461390 | 27676.5 |
| lipid-a-disaccharide synthase n-terminal domain-containing protein | IZT61_05930 | Q9Z6U3 | + | 1461378 - 1462031 | 25614.9 |
| hypothetical protein | IZT61_05935 | Not Available | - | 1462401 - 1462685 | 11164.5 |
| voc family protein | IZT61_05940 | Not Available | - | 1462782 - 1463162 | 14077.7 |
| dinb family protein | IZT61_05945 | Not Available | - | 1463216 - 1463686 | 17960.2 |
| aminotransferase class v-fold plp-dependent enzyme | IZT61_05950 | Q9PQ36 | + | 1464148 - 1465221 | 40081.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.