Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| merr family transcriptional regulator | IZT61_05855 | Q50900 | - | 1446129 - 1447022 | 33891.2 |
| hypothetical protein | IZT61_05860 | Not Available | - | 1447657 - 1447938 | 10713.8 |
| response regulator | IZT61_05865 | Q9KU36 | + | 1448455 - 1449171 | 26410.9 |
| response regulator | IZT61_05870 | Q4A160 | + | 1449297 - 1449653 | 13785.7 |
| hypothetical protein | IZT61_05875 | Not Available | + | 1449665 - 1450294 | 22377.4 |
| giy-yig nuclease family protein | IZT61_05880 | P9WLJ0 | + | 1450662 - 1452035 | 51761.4 |
| mmcq/yjbr family dna-binding protein | IZT61_05885 | Not Available | + | 1452332 - 1452682 | 13112.6 |
| extradiol dioxygenase | IZT61_05890 | Not Available | + | 1452779 - 1453195 | 15291.1 |
| adenosylmethionine--8-amino-7-oxononanoate transaminase | IZT61_05895 | Q31SA6 | - | 1453766 - 1455067 | 48115.9 |
| nudix domain-containing protein | IZT61_05900 | Not Available | - | 1455095 - 1455544 | 17265.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.