Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| zeta toxin family protein | IZT61_05705 | P44173 | - | 1416943 - 1417527 | 22257.8 |
| res family nad+ phosphorylase | IZT61_05710 | A1JNH0 | - | 1417928 - 1418383 | 17181.4 |
| duf2384 domain-containing protein | IZT61_05715 | A0A0C5XKJ0 | - | 1418386 - 1418829 | 16703.0 |
| yqge/algh family protein | IZT61_05720 | Q11U74 | - | 1419025 - 1419588 | 21087.0 |
| pyridoxamine 5'-phosphate oxidase | IZT61_05725 | Q72PF1 | + | 1419635 - 1420285 | 25015.7 |
| 3-hydroxybutyryl-coa dehydrogenase | IZT61_05730 | P45856 | + | 1420431 - 1421321 | 31880.8 |
| hypothetical protein | IZT61_05735 | Not Available | + | 1421351 - 1421581 | 8908.89 |
| holliday junction branch migration dna helicase ruvb | IZT61_05740 | A6H1G3 | + | 1421701 - 1422723 | 37466.1 |
| gnat family n-acetyltransferase | IZT61_05745 | P54608 | + | 1423163 - 1424671 | 57722.2 |
| hypothetical protein | IZT61_05750 | Not Available | - | 1425070 - 1425276 | 7581.13 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.