Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | IZT61_05660 | Q896X8 | + | 1406845 - 1407995 | 42481.9 |
| rna methyltransferase | IZT61_05665 | Q49V41 | + | 1408041 - 1408571 | 19811.8 |
| ompa family protein | IZT61_05670 | P13794 | + | 1408857 - 1410146 | 46259.3 |
| dead/deah box helicase | IZT61_05675 | Q6CXT4 | - | 1410410 - 1411708 | 48699.9 |
| Trna-pseudo | Not Available | Not Available | + | 1412178 - 1412252 | Not Available |
| hypothetical protein | IZT61_05680 | Not Available | + | 1412473 - 1413189 | 28006.1 |
| nad(p)/fad-dependent oxidoreductase | IZT61_05685 | P37631 | - | 1413487 - 1414677 | 43472.2 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | IZT61_05690 | P50504 | + | 1414731 - 1415870 | 42458.2 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | IZT61_05695 | Q9WYS7 | + | 1415975 - 1416493 | 18014.7 |
| hypothetical protein | IZT61_05700 | Not Available | - | 1416804 - 1416956 | 5981.56 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.