Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cold shock domain-containing protein | IZT61_05460 | Not Available | - | 1364586 - 1364810 | 8205.17 |
| hypothetical protein | IZT61_05465 | Not Available | + | 1365069 - 1365251 | 7026.39 |
| pqq-dependent sugar dehydrogenase | IZT61_05470 | Q6UWX4 | + | 1365449 - 1368157 | 99639.9 |
| had family phosphatase | IZT61_05475 | Q8A947 | + | 1368357 - 1368992 | 24424.0 |
| proline dehydrogenase family protein | IZT61_05480 | Q86H28 | - | 1369867 - 1371060 | 45309.5 |
| rna-binding s4 domain-containing protein | IZT61_05485 | P0AAS7 | + | 1371157 - 1371363 | 7472.21 |
| 3-dehydroquinate synthase | IZT61_05490 | A6LEZ7 | + | 1371363 - 1372421 | 39460.0 |
| sterol desaturase family protein | IZT61_05495 | P68434 | + | 1372423 - 1373385 | 37607.4 |
| hypothetical protein | IZT61_05500 | Not Available | + | 1373500 - 1373691 | 7125.77 |
| type ii toxin-antitoxin system rele/pare family toxin | IZT61_05505 | Not Available | + | 1373688 - 1374014 | 12071.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.