Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_05410 | Not Available | - | 1349760 - 1350518 | 29713.9 |
| Trna-met | Not Available | Not Available | + | 1350813 - 1350889 | Not Available |
| hrdc domain-containing protein | IZT61_05420 | Q196V4 | + | 1351155 - 1353254 | 79224.0 |
| hsp70 family protein | IZT61_05425 | P36928 | + | 1353689 - 1354957 | 47362.4 |
| arylsulfatase | IZT61_05430 | Q32KH5 | - | 1355420 - 1356838 | 52427.1 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_05435 | T2KNB8 | - | 1356840 - 1358342 | 56095.2 |
| tonb-dependent receptor | IZT61_05440 | T2KM18 | - | 1358349 - 1361426 | 112552.0 |
| arac family transcriptional regulator | IZT61_05445 | Not Available | - | 1362470 - 1363249 | 29906.2 |
| cold shock domain-containing protein | IZT61_05450 | E1WGN1 | - | 1363460 - 1363654 | 6885.36 |
| cold shock domain-containing protein | IZT61_05455 | P0A356 | - | 1363667 - 1363852 | 6756.09 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.