Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent helicase | IZT61_05160 | Q8K2I9 | + | 1290226 - 1292001 | 67627.6 |
| spfh domain-containing protein | IZT61_05165 | O34789 | + | 1292183 - 1293307 | 41855.0 |
| dna helicase pria | IZT61_05170 | O34434 | + | 1293379 - 1294467 | 41386.3 |
| hypothetical protein | IZT61_05175 | Not Available | + | 1295268 - 1295648 | 14002.1 |
| tonb-dependent receptor | IZT61_05180 | Not Available | + | 1295757 - 1298303 | 94548.3 |
| hypothetical protein | IZT61_05185 | Not Available | - | 1298479 - 1298790 | 11868.1 |
| duf262 domain-containing protein | IZT61_05190 | Not Available | + | 1299141 - 1300253 | 43220.6 |
| endoribonuclease | IZT61_05195 | Not Available | + | 1300257 - 1300757 | 19298.5 |
| s9 family peptidase | IZT61_05200 | Q6F3I7 | - | 1301420 - 1303936 | 95791.9 |
| polysaccharide deacetylase family protein | IZT61_05205 | P94361 | + | 1304113 - 1304991 | 33082.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.