Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin domain-containing protein | IZT61_05060 | P37512 | - | 1260080 - 1262101 | 76782.7 |
| dipeptide epimerase | IZT61_05065 | Q11T61 | + | 1262234 - 1263331 | 40650.0 |
| glycoside hydrolase family 25 protein | IZT61_05070 | Q8FFY2 | - | 1263419 - 1264285 | 33501.8 |
| type ii crispr rna-guided endonuclease cas9 | IZT61_05075 | Q9CLT2 | + | 1264507 - 1269033 | 176334.0 |
| type ii crispr-associated endonuclease cas1 | IZT61_05080 | C9X1G6 | + | 1269037 - 1270065 | 38629.5 |
| crispr-associated endonuclease cas2 | IZT61_05085 | A6GZS1 | + | 1270069 - 1270398 | 13014.0 |
| hypothetical protein | IZT61_05090 | Not Available | + | 1273511 - 1273654 | 5172.15 |
| nudix domain-containing protein | IZT61_05095 | Q75UV1 | - | 1277816 - 1278427 | 23666.0 |
| orotate phosphoribosyltransferase | IZT61_05100 | A6KYP1 | + | 1278444 - 1279079 | 22951.7 |
| srpbcc family protein | IZT61_05105 | Not Available | + | 1279113 - 1279511 | 14934.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.