Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| response regulator | IZT61_04660 | Q82Z76 | + | 1171421 - 1172158 | 28250.2 |
| histidine kinase | IZT61_04665 | O31516 | + | 1172374 - 1173471 | 41925.3 |
| histone h1 | IZT61_04670 | Not Available | - | 1173750 - 1173929 | 6625.99 |
| hypothetical protein | IZT61_04675 | Not Available | + | 1175962 - 1176279 | 11664.9 |
| carboxypeptidase regulatory-like domain-containing protein | IZT61_04680 | Not Available | + | 1176317 - 1176679 | 13341.2 |
| rna polymerase sigma factor | IZT61_04685 | Q45585 | + | 1176681 - 1177253 | 22247.8 |
| hypothetical protein | IZT61_04690 | Not Available | + | 1177250 - 1177735 | 18724.9 |
| duf3891 family protein | IZT61_04695 | Not Available | + | 1178086 - 1178799 | 27425.7 |
| pas domain-containing protein | IZT61_04700 | P9WLZ6 | - | 1179715 - 1181313 | 59920.7 |
| sigma-70 family rna polymerase sigma factor | IZT61_04705 | Q3IYV6 | - | 1181712 - 1182320 | 23561.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.