Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_04210 | Not Available | - | 1073336 - 1075984 | 99908.9 |
| exo-alpha-sialidase | IZT61_04215 | Not Available | + | 1076239 - 1077375 | 42460.6 |
| cupin domain-containing protein | IZT61_04220 | Not Available | - | 1078658 - 1079068 | 15010.5 |
| alpha/beta hydrolase | IZT61_04225 | P9WK86 | - | 1079123 - 1080367 | 44731.4 |
| cupin domain-containing protein | IZT61_04230 | Q0QFQ2 | - | 1080372 - 1080854 | 17669.4 |
| sugar o-acetyltransferase | IZT61_04235 | P37515 | - | 1080900 - 1081460 | 20080.2 |
| helix-turn-helix transcriptional regulator | IZT61_04240 | O32071 | + | 1081665 - 1082558 | 34180.7 |
| rna polymerase sigma-70 factor | IZT61_04245 | Q3IYV6 | + | 1082824 - 1083426 | 23388.2 |
| hypothetical protein | IZT61_04250 | Not Available | - | 1083417 - 1084424 | 36968.8 |
| fecr domain-containing protein | IZT61_04255 | Not Available | + | 1084562 - 1085746 | 44360.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.