Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | IZT61_04160 | Q55890 | + | 1047657 - 1048127 | 17175.0 |
| hypothetical protein | IZT61_04165 | Not Available | + | 1048879 - 1049256 | 14329.7 |
| glutathione-dependent formaldehyde dehydrogenase | IZT61_04170 | O06012 | + | 1049276 - 1050427 | 41475.2 |
| hypothetical protein | IZT61_04175 | Not Available | + | 1050433 - 1050915 | 18111.8 |
| mbl fold metallo-hydrolase | IZT61_04180 | O34409 | + | 1051038 - 1051832 | 29205.0 |
| hypothetical protein | IZT61_04185 | Not Available | - | 1051902 - 1052147 | 8996.84 |
| ompa family protein | IZT61_04190 | P24016 | - | 1052554 - 1054500 | 71861.1 |
| type ix secretion system membrane protein porp/sprf | IZT61_04195 | Not Available | - | 1054514 - 1055485 | 35651.6 |
| duf11 domain-containing protein | IZT61_04200 | P29579 | - | 1055541 - 1071677 | 541590.0 |
| helix-turn-helix transcriptional regulator | IZT61_04205 | Q05587 | - | 1071887 - 1073071 | 44255.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.