Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase y family protein | IZT61_04110 | Q9A3J2 | + | 1034906 - 1036408 | 56611.1 |
| error-prone dna polymerase | IZT61_04115 | Q92ZJ6 | + | 1037628 - 1040855 | 122162.0 |
| ferritin-like domain-containing protein | IZT61_04120 | P21362 | - | 1041214 - 1041702 | 18018.3 |
| hypothetical protein | IZT61_04125 | Not Available | - | 1041810 - 1042160 | 12297.3 |
| duf2243 domain-containing protein | IZT61_04130 | Not Available | - | 1042331 - 1042876 | 20307.4 |
| mbl fold metallo-hydrolase | IZT61_04135 | O07607 | - | 1043097 - 1043840 | 27149.7 |
| duf4142 domain-containing protein | IZT61_04140 | Not Available | + | 1044735 - 1045256 | 18843.5 |
| hypothetical protein | IZT61_04145 | Not Available | + | 1045359 - 1045562 | 7501.3 |
| manganese catalase family protein | IZT61_04150 | O34423 | + | 1045628 - 1046587 | 35878.2 |
| cyanophycinase | IZT61_04155 | P0C8P2 | + | 1046696 - 1047544 | 30351.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.