Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf5615 family pin-like protein | IZT61_03960 | Not Available | + | 990612 - 990971 | 14055.0 |
| duf72 domain-containing protein | IZT61_03965 | Q8XCI6 | + | 990978 - 991871 | 34045.6 |
| mfs transporter | IZT61_03970 | Q02LE0 | - | 992276 - 993478 | 41932.6 |
| duf1579 domain-containing protein | IZT61_03975 | Not Available | - | 994053 - 994550 | 18765.0 |
| 3'-5' exonuclease | IZT61_03980 | P61875 | + | 994768 - 995481 | 27475.1 |
| abc transporter atp-binding protein | IZT61_03985 | Q6D3A9 | + | 995481 - 997184 | 63331.0 |
| type ii toxin-antitoxin system rele/pare family toxin | IZT61_03990 | Not Available | + | 997449 - 997823 | 14982.3 |
| helix-turn-helix transcriptional regulator | IZT61_03995 | Not Available | + | 997798 - 998100 | 11507.0 |
| ribonuclease r | IZT61_04000 | O32231 | + | 998261 - 1000393 | 80746.6 |
| polyprenyl synthetase family protein | IZT61_04005 | Q8PW34 | + | 1000437 - 1001411 | 36417.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.