Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_03910 | Not Available | + | 976495 - 977508 | 36359.2 |
| carboxypeptidase regulatory-like domain-containing protein | IZT61_03915 | Not Available | + | 977517 - 980300 | 103069.0 |
| endonuclease muts2 | IZT61_03920 | B0S1P2 | - | 981031 - 983409 | 89705.7 |
| duf4296 domain-containing protein | IZT61_03925 | Not Available | - | 983411 - 983962 | 20651.8 |
| yggs family pyridoxal phosphate-dependent enzyme | IZT61_03930 | O66631 | + | 984034 - 984726 | 26119.5 |
| gnat family n-acetyltransferase | IZT61_03935 | Q3T0Q0 | + | 984906 - 985373 | 17743.2 |
| aspartate kinase | IZT61_03940 | Q57991 | + | 985375 - 986637 | 47819.9 |
| hypothetical protein | IZT61_03945 | Q6KHE2 | + | 987183 - 988364 | 43880.5 |
| arginine decarboxylase | IZT61_03950 | A8G243 | + | 988829 - 990217 | 54063.6 |
| duf433 domain-containing protein | IZT61_03955 | P55438 | + | 990395 - 990631 | 8875.82 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.