Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | IZT61_03860 | Not Available | + | 960575 - 961138 | 20478.9 |
| cellulase family glycosylhydrolase | IZT61_03865 | W8QRE4 | - | 961176 - 962930 | 66748.4 |
| glucosylceramidase | IZT61_03870 | Q4WBR2 | - | 962946 - 964349 | 51653.9 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_03875 | A7LXT5 | - | 964822 - 966351 | 55519.3 |
| tonb-dependent receptor | IZT61_03880 | T2KPJ3 | - | 966362 - 969502 | 114168.0 |
| transcriptional regulator | IZT61_03885 | T2KMF4 | - | 969761 - 972676 | 111470.0 |
| arac family transcriptional regulator | IZT61_03890 | O32071 | + | 972902 - 973780 | 34171.4 |
| hypothetical protein | IZT61_03895 | Not Available | + | 974354 - 974740 | 14049.2 |
| hypothetical protein | IZT61_03900 | Not Available | + | 975093 - 975629 | 18997.2 |
| molecular chaperone | IZT61_03905 | Not Available | + | 975708 - 976502 | 29231.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.