Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 95 protein | IZT61_03760 | Q8L7W8 | + | 944535 - 946790 | 84222.1 |
| nuclear transport factor 2 family protein | IZT61_03765 | Not Available | + | 946848 - 947201 | 13557.3 |
| hypothetical protein | IZT61_03770 | Not Available | - | 947204 - 947398 | 7209.67 |
| gaf domain-containing sensor histidine kinase | IZT61_03775 | Q9HWR3 | - | 947398 - 948483 | 39565.4 |
| cold-shock protein | IZT61_03780 | O30875 | - | 948868 - 949065 | 7330.74 |
| peroxiredoxin | IZT61_03785 | Q54SE2 | - | 949272 - 949907 | 23379.6 |
| trypsin-like peptidase domain-containing protein | IZT61_03790 | P55377 | - | 950298 - 951401 | 40582.2 |
| sigma-70 family rna polymerase sigma factor | IZT61_03795 | Not Available | - | 951410 - 951976 | 22013.3 |
| hypothetical protein | IZT61_03800 | Not Available | + | 952181 - 952402 | 7641.87 |
| hypothetical protein | IZT61_03805 | Not Available | + | 952545 - 952766 | 7659.99 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.