Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_03610 | Not Available | + | 910333 - 910551 | 8325.19 |
| selt/selw/selh family protein | IZT61_03615 | Q9CQ86 | - | 910556 - 910837 | 10723.0 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | IZT61_03620 | Q11TG8 | + | 911384 - 912742 | 49441.7 |
| hypothetical protein | IZT61_03625 | Not Available | + | 912961 - 913293 | 11267.7 |
| hypothetical protein | IZT61_03630 | Not Available | - | 913343 - 914086 | 26729.6 |
| nucleotide pyrophosphohydrolase | IZT61_03635 | Q32KY6 | + | 915232 - 915555 | 12512.0 |
| duf2075 domain-containing protein | IZT61_03640 | Q12179 | + | 915556 - 917736 | 84135.7 |
| hypothetical protein | IZT61_03645 | Not Available | + | 917938 - 918813 | 33140.6 |
| stas-like domain-containing protein | IZT61_03650 | Not Available | + | 918901 - 919236 | 12945.2 |
| pin domain-containing protein | IZT61_03655 | Not Available | + | 919248 - 919832 | 22717.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.