Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | IZT61_03560 | T2KNB8 | - | 896621 - 898084 | 53976.7 |
| tonb-dependent receptor | IZT61_03565 | T2KPJ3 | - | 898097 - 901186 | 110830.0 |
| histidine kinase | IZT61_03570 | T2KMF4 | + | 901827 - 904994 | 120057.0 |
| response regulator | IZT61_03575 | T2KMF4 | + | 904998 - 905768 | 29408.6 |
| hypothetical protein | IZT61_03580 | Not Available | - | 906769 - 906954 | 6798.93 |
| response regulator | IZT61_03585 | Q31S42 | - | 907066 - 907428 | 13963.1 |
| ai-2e family transporter | IZT61_03590 | P0AGM1 | - | 907430 - 908488 | 38430.8 |
| duf3175 domain-containing protein | IZT61_03595 | Not Available | + | 908609 - 908908 | 11447.6 |
| hypothetical protein | IZT61_03600 | Not Available | + | 908915 - 909121 | 7148.42 |
| hypothetical protein | IZT61_03605 | Not Available | - | 909803 - 910198 | 14407.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.