Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type i dna topoisomerase | IZT61_03510 | Q87AQ6 | + | 879754 - 882300 | 95596.0 |
| hypothetical protein | IZT61_03515 | Not Available | + | 882490 - 882894 | 15098.4 |
| atp-binding protein | IZT61_03520 | P9WLM8 | - | 883008 - 884159 | 43366.1 |
| nuclear transport factor 2 family protein | IZT61_03525 | Not Available | - | 884277 - 884702 | 15485.2 |
| hypothetical protein | IZT61_03530 | P76578 | + | 884835 - 890414 | 207372.0 |
| transmembrane 220 family protein | IZT61_03535 | Not Available | + | 890679 - 891059 | 14746.1 |
| llm class flavin-dependent oxidoreductase | IZT61_03540 | P0ADV6 | - | 891092 - 892099 | 36684.6 |
| esterase family protein | IZT61_03545 | P23553 | - | 892207 - 893043 | 31602.7 |
| arylsulfatase | IZT61_03550 | P51691 | - | 893795 - 895510 | 63405.1 |
| cellulase family glycosylhydrolase | IZT61_03555 | Not Available | - | 895534 - 896586 | 40389.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.