Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_00310 | Not Available | - | 64130 - 64342 | 8258.8 |
| lysine--trna ligase | IZT61_00315 | Q5L9E5 | - | 64483 - 66192 | 64734.7 |
| long-chain fatty acid--coa ligase | IZT61_00320 | P44446 | - | 66840 - 68753 | 71782.8 |
| iron-sulfur cluster assembly accessory protein | IZT61_00325 | A1WVE3 | - | 68861 - 69187 | 11842.9 |
| fe-s cluster assembly scaffold iscu | IZT61_00330 | O31270 | - | 69281 - 69694 | 14876.7 |
| iscs subfamily cysteine desulfurase | IZT61_00335 | Q2INI7 | - | 69833 - 71044 | 44230.0 |
| methylmalonyl-coa epimerase | IZT61_00340 | O58010 | + | 71161 - 71568 | 15062.2 |
| type b 50s ribosomal protein l31 | IZT61_00345 | A5EVX0 | + | 72164 - 72412 | 9697.61 |
| glmu family protein | IZT61_00350 | A6UUQ4 | + | 72482 - 73651 | 43441.6 |
| triose-phosphate isomerase | IZT61_00355 | Q11PZ7 | + | 73792 - 74553 | 27659.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.