Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| paai family thioesterase | IZT61_03410 | Q9NPJ3 | - | 845855 - 846295 | 16149.6 |
| hypothetical protein | IZT61_03415 | Not Available | - | 846384 - 846617 | 9061.29 |
| mannonate dehydratase | IZT61_03420 | Q8A7U2 | - | 846702 - 847871 | 44011.4 |
| sdr family oxidoreductase | IZT61_03425 | O34896 | - | 848051 - 848875 | 28966.9 |
| glycoside hydrolase family 30 protein | IZT61_03430 | Q9UB00 | - | 848897 - 850375 | 55203.3 |
| glycoside hydrolase family 88 protein | IZT61_03435 | T2KLZ3 | - | 850768 - 851937 | 43976.0 |
| alginate lyase family protein | IZT61_03440 | Not Available | - | 851939 - 853123 | 45016.5 |
| duf4982 domain-containing protein | IZT61_03445 | T2KPJ7 | - | 853126 - 855588 | 93342.0 |
| duf4982 domain-containing protein | IZT61_03450 | T2KPJ7 | - | 855593 - 858235 | 99152.1 |
| glycoside hydrolase family 3 c-terminal domain-containing protein | IZT61_03455 | Q56078 | - | 859591 - 861813 | 81956.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.