Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hmuy family protein | IZT61_03310 | Not Available | + | 823199 - 823789 | 21220.0 |
| lmo0937 family membrane protein | IZT61_03315 | Not Available | - | 824072 - 824230 | 5497.28 |
| duf2795 domain-containing protein | IZT61_03320 | Not Available | - | 824401 - 824622 | 8601.69 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | IZT61_03325 | O34899 | - | 824707 - 825255 | 20719.0 |
| abc transporter atp-binding protein | IZT61_03330 | O31711 | - | 825424 - 826182 | 27542.0 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatc | IZT61_03335 | Q11R87 | - | 826298 - 826588 | 11239.6 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | IZT61_03340 | Q9US20 | - | 826590 - 827315 | 28135.2 |
| tryptophan--trna ligase | IZT61_03345 | Q7MT94 | + | 827492 - 828490 | 37507.8 |
| deoxynucleoside kinase | IZT61_03350 | P37529 | + | 828578 - 829192 | 23707.3 |
| hypothetical protein | IZT61_03355 | Not Available | + | 829382 - 829924 | 20602.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.