Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_03260 | Not Available | - | 809180 - 809398 | 8175.37 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_03265 | Not Available | - | 809804 - 811366 | 58227.8 |
| susc/raga family tonb-linked outer membrane protein | IZT61_03270 | T2KPJ3 | - | 811528 - 814758 | 120082.0 |
| fecr domain-containing protein | IZT61_03275 | Not Available | - | 814978 - 816132 | 43655.8 |
| hypothetical protein | IZT61_03280 | Not Available | + | 816208 - 816528 | 12605.2 |
| sigma-70 family rna polymerase sigma factor | IZT61_03285 | Q45585 | - | 816525 - 817112 | 22886.8 |
| gfo/idh/moca family oxidoreductase | IZT61_03290 | B2FLK4 | - | 817508 - 818860 | 50327.3 |
| laci family dna-binding transcriptional regulator | IZT61_03295 | P46828 | + | 819020 - 820042 | 38248.9 |
| helix-turn-helix transcriptional regulator | IZT61_03300 | A6TGB0 | - | 820049 - 820996 | 36073.8 |
| tonb-dependent receptor | IZT61_03305 | Q8Z314 | + | 821095 - 823167 | 77146.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.