Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| magnesium transporter | IZT61_03060 | Q5SMG8 | - | 769327 - 770676 | 50014.1 |
| hypothetical protein | IZT61_03065 | Not Available | + | 770902 - 771060 | 5694.82 |
| magnesium/cobalt transporter cora | IZT61_03070 | Q9WZ31 | - | 771397 - 772407 | 39431.4 |
| wbqc family protein | IZT61_03075 | P9WLW4 | - | 772522 - 773133 | 24179.9 |
| lysophospholipid acyltransferase family protein | IZT61_03080 | P0ACV2 | + | 773173 - 774045 | 34027.0 |
| glycosyltransferase family 2 protein | IZT61_03085 | P9WMY2 | + | 774050 - 775069 | 38395.2 |
| tlpa family protein disulfide reductase | IZT61_03090 | Q63DQ8 | - | 775665 - 776378 | 27115.8 |
| type ii 3-dehydroquinate dehydratase | IZT61_03095 | Q8RH64 | - | 776408 - 776824 | 15254.4 |
| site-specific tyrosine recombinase xerd | IZT61_03100 | Q8Y5V0 | + | 776885 - 777784 | 33649.0 |
| peptide chain release factor n(5)-glutamine methyltransferase | IZT61_03105 | A6H162 | - | 777781 - 778629 | 31750.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.