Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | IZT61_00260 | Q11TS0 | + | 55468 - 56124 | 24626.9 |
| ssra-binding protein smpb | IZT61_00265 | A6L3C0 | - | 56204 - 56653 | 17484.4 |
| redoxin domain-containing protein | IZT61_00270 | A0RBT0 | + | 56847 - 57332 | 18396.8 |
| nramp family divalent metal transporter | IZT61_00275 | Q8ZSB0 | - | 57622 - 59490 | 68436.8 |
| metal-dependent transcriptional regulator | IZT61_00280 | P0A673 | - | 59465 - 60139 | 25350.5 |
| lrp/asnc family transcriptional regulator | IZT61_00285 | O07920 | + | 60264 - 60734 | 18027.3 |
| uracil-dna glycosylase | IZT61_00290 | C1DQR0 | - | 61220 - 61900 | 25221.0 |
| thioredoxin family protein | IZT61_00295 | Not Available | - | 62024 - 62536 | 19250.6 |
| duf2892 domain-containing protein | IZT61_00300 | Not Available | + | 62647 - 63186 | 20663.9 |
| pyridoxamine 5'-phosphate oxidase family protein | IZT61_00305 | P80238 | + | 63422 - 63976 | 20164.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.