Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4982 domain-containing protein | IZT61_02910 | T2KPJ7 | - | 729111 - 732596 | 131029.0 |
| glycoside hydrolase n-terminal domain-containing protein | IZT61_02915 | Q8L7W8 | - | 733075 - 735882 | 104019.0 |
| glycoside hydrolase family 28 protein | IZT61_02920 | A7PZL3 | - | 735884 - 737461 | 58147.5 |
| glycoside hydrolase | IZT61_02925 | E8MGH9 | - | 738146 - 739717 | 60644.7 |
| hypothetical protein | IZT61_02930 | Not Available | - | 739714 - 742446 | 103374.0 |
| sdr family oxidoreductase | IZT61_02935 | Q9WYG0 | + | 743075 - 743839 | 26905.3 |
| fumarylacetoacetate hydrolase family protein | IZT61_02940 | A9ALD1 | + | 744326 - 745180 | 31125.0 |
| l-rhamnose mutarotase | IZT61_02945 | Q8P3K1 | + | 745182 - 745511 | 12842.5 |
| amidohydrolase family protein | IZT61_02950 | P55567 | + | 745515 - 746336 | 32220.7 |
| alpha-hydroxy-acid oxidizing protein | IZT61_02955 | A5UFG9 | + | 746434 - 747603 | 43142.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.