Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 2 | IZT61_02810 | Q56307 | - | 691039 - 693816 | 105523.0 |
| sialate o-acetylesterase | IZT61_02815 | Q9HAT2 | - | 693816 - 695147 | 49509.3 |
| hypothetical protein | IZT61_02820 | Not Available | + | 695146 - 695712 | 20910.0 |
| six-hairpin glycosidase | IZT61_02825 | Not Available | - | 695684 - 697516 | 68902.4 |
| glycoside hydrolase family 43 protein | IZT61_02830 | A0A3R0A696 | - | 697738 - 698673 | 35616.6 |
| glycoside hydrolase family 140 protein | IZT61_02835 | Not Available | - | 699152 - 700552 | 53566.1 |
| pectate lyase | IZT61_02840 | Not Available | - | 700555 - 703710 | 116505.0 |
| polysaccharide lyase | IZT61_02845 | B8NQQ7 | - | 704534 - 706165 | 59526.7 |
| polysaccharide lyase | IZT61_02850 | B8NQQ7 | - | 706330 - 707985 | 60214.5 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_02855 | T2KN63 | - | 709217 - 711046 | 67252.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.