Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| coa transferase | IZT61_02710 | P76518 | - | 656410 - 657573 | 42719.2 |
| coa transferase | IZT61_02715 | Q9HAC7 | - | 657934 - 659088 | 42254.1 |
| extracellular solute-binding protein | IZT61_02720 | Q7LYW7 | - | 659085 - 660245 | 43355.5 |
| duf4981 domain-containing protein | IZT61_02725 | O52847 | - | 661048 - 664473 | 128706.0 |
| duf4982 domain-containing protein | IZT61_02730 | A7LXS9 | - | 664770 - 667121 | 87988.5 |
| glycosylase | IZT61_02735 | B0K2C3 | - | 667310 - 668410 | 42545.7 |
| family 78 glycoside hydrolase catalytic domain | IZT61_02740 | T2KPL4 | - | 668554 - 671313 | 102974.0 |
| iclr family transcriptional regulator | IZT61_02745 | P77300 | + | 671589 - 672362 | 28633.8 |
| type ii toxin-antitoxin system rele/pare family toxin | IZT61_02750 | Not Available | + | 672942 - 673286 | 13717.7 |
| helix-turn-helix transcriptional regulator | IZT61_02755 | P23873 | + | 673286 - 673597 | 11740.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.