Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| methionyl-trna formyltransferase | IZT61_21865 | Q5L975 | - | 5357285 - 5358193 | 33163.2 |
| dna topoisomerase ib | IZT61_21870 | Q7T6X9 | + | 5358285 - 5359328 | 39738.2 |
| pas domain-containing protein | IZT61_21875 | Q45614 | + | 5359357 - 5361219 | 70021.1 |
| hypothetical protein | IZT61_21880 | Not Available | - | 5361338 - 5361544 | 7659.82 |
| duf1343 domain-containing protein | IZT61_21885 | P40407 | - | 5362084 - 5363352 | 46925.7 |
| abc transporter permease | IZT61_21890 | Q9PEF2 | + | 5363514 - 5364734 | 46181.4 |
| trna pseudouridine synthase a | IZT61_21895 | B2RIV6 | - | 5364830 - 5365636 | 30889.3 |
| sec-c domain-containing protein | IZT61_21900 | B4EXS5 | + | 5365710 - 5366090 | 14606.2 |
| hypothetical protein | IZT61_21905 | Not Available | - | 5366758 - 5367159 | 14668.6 |
| nucleoside triphosphate pyrophosphohydrolase | IZT61_21910 | P44723 | - | 5367162 - 5367968 | 30651.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.