Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal-phosphate dependent enzyme | IZT61_21815 | Q9WY68 | - | 5350178 - 5351056 | 32617.6 |
| hypothetical protein | IZT61_21820 | Not Available | - | 5351417 - 5352445 | 36619.0 |
| rlua family pseudouridine synthase | IZT61_21825 | O50310 | + | 5352535 - 5353563 | 39189.9 |
| aminotransferase class iv | IZT61_21830 | P28305 | + | 5353567 - 5354406 | 31598.4 |
| type ii toxin-antitoxin system pard family antitoxin | IZT61_21835 | P58091 | + | 5354511 - 5354762 | 9542.37 |
| type ii toxin-antitoxin system rele/pare family toxin | IZT61_21840 | P9WHG6 | + | 5354759 - 5355058 | 11842.9 |
| hypothetical protein | IZT61_21845 | Not Available | + | 5355301 - 5356053 | 28534.1 |
| plasmid stabilization protein | IZT61_21850 | Q58503 | - | 5356297 - 5356563 | 10401.7 |
| hypothetical protein | IZT61_21855 | Not Available | - | 5356563 - 5356811 | 9502.47 |
| recombinase family protein | IZT61_21860 | P03013 | - | 5356970 - 5357161 | 6910.36 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.