Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | IZT61_21765 | O05409 | + | 5333453 - 5334037 | 22766.5 |
| fecr domain-containing protein | IZT61_21770 | Not Available | + | 5334184 - 5335302 | 41831.0 |
| susc/raga family tonb-linked outer membrane protein | IZT61_21775 | T2KMI3 | + | 5335498 - 5338926 | 128121.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_21780 | T2KN63 | + | 5338937 - 5340400 | 55335.8 |
| duf4843 domain-containing protein | IZT61_21785 | Not Available | + | 5340416 - 5341264 | 32336.9 |
| hypothetical protein | IZT61_21790 | Not Available | + | 5341287 - 5342717 | 52705.8 |
| ahpc/tsa family protein | IZT61_21795 | Q73B22 | + | 5342783 - 5343916 | 41179.3 |
| trypsin-like peptidase domain-containing protein | IZT61_21800 | Q2SL36 | + | 5344499 - 5346175 | 61131.6 |
| sulfatase-like hydrolase/transferase | IZT61_21805 | Q571E4 | + | 5346465 - 5348537 | 77085.5 |
| peptide-methionine (s)-s-oxide reductase msra | IZT61_21810 | Q73U14 | + | 5349245 - 5349736 | 18600.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.