Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| adenylosuccinate synthase | IZT61_21715 | A0LZF7 | - | 5321102 - 5322382 | 46695.2 |
| transcriptional repressor | IZT61_21720 | Q46463 | - | 5322421 - 5322915 | 19234.0 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | IZT61_21725 | O54408 | - | 5323162 - 5325369 | 83656.2 |
| duf4294 domain-containing protein | IZT61_21730 | Not Available | + | 5325479 - 5326093 | 23608.9 |
| glutathione peroxidase | IZT61_21735 | Q9Z9N7 | + | 5326099 - 5326614 | 19685.6 |
| bacillithiol biosynthesis deacetylase bshb1 | IZT61_21740 | Q81ST8 | + | 5326619 - 5327335 | 26764.1 |
| acyl-coa dehydrogenase family protein | IZT61_21745 | Q96329 | + | 5328133 - 5329494 | 50517.6 |
| hypothetical protein | IZT61_21750 | Not Available | - | 5330587 - 5330988 | 15197.4 |
| l-lysine 6-transaminase | IZT61_21755 | P63510 | - | 5330991 - 5332322 | 49895.0 |
| hypothetical protein | IZT61_21760 | Not Available | + | 5332359 - 5332607 | 9839.39 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.