Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| zip family metal transporter | IZT61_21015 | P59889 | - | 5156997 - 5157713 | 26129.7 |
| phosphatase pap2 family protein | IZT61_21020 | Q8A6M3 | - | 5157713 - 5158276 | 21383.9 |
| class i sam-dependent methyltransferase | IZT61_21025 | P54458 | - | 5158273 - 5159004 | 28689.4 |
| phosphoglucosamine mutase | IZT61_21030 | Q68BJ6 | + | 5159473 - 5160861 | 50361.5 |
| cysteine desulfurase | IZT61_21035 | B8DZS1 | + | 5160865 - 5162013 | 41940.3 |
| glycoside hydrolase family 15 protein | IZT61_21040 | Q9HLE2 | + | 5162308 - 5164092 | 68726.7 |
| bifunctional alpha,alpha-trehalose-phosphate synthase (udp-forming)/trehalose-phosphatase | IZT61_21045 | G4RK44 | - | 5164556 - 5166763 | 84494.3 |
| atp-binding protein | IZT61_21050 | Q04850 | - | 5167129 - 5168481 | 51705.1 |
| sigma-54-dependent fis family transcriptional regulator | IZT61_21055 | Q06065 | - | 5168548 - 5169918 | 51575.8 |
| endonuclease domain-containing protein | IZT61_21060 | P44075 | - | 5170116 - 5170493 | 14739.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.